PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 315aa    MW: 34573.9 Da    PI: 7.2732
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G00050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.8e-13208292383
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k+lt+sdv++ gr+vlpkk ae+    + ++ +  l + d       +W++k++y  ++ks++y+l     eF k +gL++gD+++++
  ONIVA08G00050.1 208 KELTKSDVGNVGRIVLPKKDAEASlpPLLQRDPLILHMDD--MvlpVTWKFKYRYwpNNKSRMYILD-SAGEFLKTHGLQAGDVIIIY 292
                      899******************9998844445565566666..3446*********777777777777.99***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-16205293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-20205300IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-19205303No hitNo description
SMARTSM010196.1E-7206306IPR003340B3 DNA binding domain
PROSITE profilePS508638.557206308IPR003340B3 DNA binding domain
PfamPF023627.8E-10208292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PFPNPFPAPS SGFADWSAST SAFTSLAAHS  60
STAPSNAVHY SFSPCYAFWT HYMLNKNAYP TSFPAPHDDH LRLANNNHPT DAPGPASSYG  120
VESFTSPSMA PNICTHMPPI EGPISAKEDK KPEILPRVVK SSDELETRNS NVEFHSETVG  180
TLPESKQGHD SRATKLLNSG EYQVILRKEL TKSDVGNVGR IVLPKKDAEA SLPPLLQRDP  240
LILHMDDMVL PVTWKFKYRY WPNNKSRMYI LDSAGEFLKT HGLQAGDVII IYKNLAPGKF  300
IIRGEKAIHQ QTTNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074560.0AK107456.1 Oryza sativa Japonica Group cDNA clone:002-128-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648159.10.0PREDICTED: B3 domain-containing protein IDEF1 isoform X1
SwissprotQ6Z1Z30.0IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLA0A0E0I6730.0A0A0E0I673_ORYNI; Uncharacterized protein
STRINGLOC_Os08g01090.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-35B3 family protein